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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21413592_21417870_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21413592 - 21417870
Intron Length:
4279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GGTTGCCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACCCAT
U12 Branch Point Sequence:
GAACCCATGACA
Flanking Amino Acid:
SKIDDYDVVVRLNSAPVKGF
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
55.7
0.14
1.2
64.4
33.7
Major PPT
71
0.47
1
62
40
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
51.6
0.04
1.6
60.16
38.6

Associated Gene:

Gene:
ST3GAL3
Ensembl Gene ID:
ENSAPLG00000003303
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036649
21294912 - 21447112
152201
ENSAPLT00000029212
21294912 - 21447112
152201
ENSAPLT00000003384
21294912 - 21447112
152201
ENSAPLT00000041635
21294912 - 21447112
152201