About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21418058_21437700_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21418058 - 21437700
Intron Length:
19643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTTGTTACCA
Flanking Amino Acid:
LKYIVYKEKVSASDGFWKSV
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
83.7
0.76
0.9
78
40.1
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
57.6
0.24
2.3
78.35
38.8

Associated Gene:

Gene:
ST3GAL3
Ensembl Gene ID:
ENSAPLG00000003303
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036649
21294912 - 21447112
152201
ENSAPLT00000029212
21294912 - 21447112
152201
ENSAPLT00000003384
21294912 - 21447112
152201
ENSAPLT00000041635
21294912 - 21447112
152201