Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21437848_21446947_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21437848 - 21446947

Intron Length:

9100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAGGTATA

5'SS Class:

major

3'SS Sequence:

TCTTTCCTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

TTGCTAATGACT

Flanking Amino Acid:

PFNNGLMGRGNIPTLGSVAI

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.69

38.6

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

86.2

0.82

0.7

84.7

Minor 5ss

37.5

-1.4

3.1

42.1

44.8

Minor BPS

47.7

-0.1

1.9

70.57

40.1

Associated Gene:

Gene:

ST3GAL3

Ensembl Gene ID:

ENSAPLG00000003303

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036649

21294912 - 21447112

152201

ENSAPLT00000029212

21294912 - 21447112

152201

ENSAPLT00000003384

21294912 - 21447112

152201

ENSAPLT00000041635

21294912 - 21447112

152201