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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21465158_21465292_R

Intron Information:

Intron Rank:
145375
Intron Class:
major
Intron Phase:
Intron Coordinates:
21465158 - 21465292
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TGTTACAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
60.3
0.26
1
65.5
28
Major PPT
82.2
0.72
0.8
76.7
32.1
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
47
-0.1
2.2
72.5
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025613
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034792
21463289 - 21465526
2238