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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21476396_21476818_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
21476396 - 21476818
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGCG
5'SS Class:
major
3'SS Sequence:
TCCCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
CTGACCCCAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
59.5
39.8
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
70.6
0.46
0.7
61.4
29.1
Minor 5ss
24.9
-2.9
3
22.5
36.9
Minor BPS
49.3
0.03
2
69.94
46.3

Associated Gene:

Gene:
DMAP1
Ensembl Gene ID:
ENSAPLG00000010717
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025331
21475748 - 21505032
29285