Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21500976_21502809_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21500976 - 21502809

Intron Length:

1834

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCTCCCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAA

U12 Branch Point Sequence:

GGGTGTTTAACA

Flanking Amino Acid:

LEQMLMELGVDLNPMPTEEI

Intron Amino Acid Position:

350

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.7

88.4

18.8

Major BPS

72.1

0.55

1.1

63.7

43.9

Major PPT

80.6

0.69

0.7

74.2

Minor 5ss

29.6

-2.3

2.6

32.7

42.2

Minor BPS

57.7

0.24

1.8

64.52

Associated Gene:

Gene:

DMAP1

Ensembl Gene ID:

ENSAPLG00000010717

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025331

21475748 - 21505032

29285

ENSAPLT00000011182

21476819 - 21503672

26854