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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21503094_21503975_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21503094 - 21503975
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
TGTATTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ACTTTCTCAAAT
Flanking Amino Acid:
VVGAPLTPNSDLENTLSVNG
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
60.8
45.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.3
0.68
0.9
74.2
40.1
Minor 5ss
26.7
-2.7
3
31.4
42.5
Minor BPS
60.6
0.41
1.6
75.64
40.8

Associated Gene:

Gene:
DMAP1
Ensembl Gene ID:
ENSAPLG00000010717
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025331
21475748 - 21505032
29285