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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21511372_21539058_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21511372 - 21539058
Intron Length:
27687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
TACACATTTACT
Flanking Amino Acid:
QHIGRPHSGIGDGPHRSKHG
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
75.2
0.57
1
79.3
33.1
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
51.1
0.11
2
71.38
44.7

Associated Gene:

Gene:
ERI3
Ensembl Gene ID:
ENSAPLG00000010575
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011025
21511249 - 21613110
101862