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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2151273_2151618_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2151273 - 2151618
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
AAATACTAAATT
Flanking Amino Acid:
QMADGNQSQLAMSHLNGQKM
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.7
40.1
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
89.8
0.89
0.7
88.4
28.7
Minor 5ss
35.1
-1.7
3.2
40.2
45.4
Minor BPS
53.4
0.18
1.8
69.72
40.9

Associated Gene:

Gene:
PTBP2
Ensembl Gene ID:
ENSAPLG00000011687
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027774
2104641 - 2152445
47805
ENSAPLT00000027173
2106136 - 2152273
46138
ENSAPLT00000012235
2106136 - 2152273
46138