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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2152011_2152143_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2152011 - 2152143
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTGTTTCAGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TATTGTTTGAGT
Flanking Amino Acid:
GGTVKAFKFFQDHKMALLQM
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
69.8
0.45
1.1
73.1
36.3
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
52.8
0.17
2.1
75.39
41.9

Associated Gene:

Gene:
PTBP2
Ensembl Gene ID:
ENSAPLG00000011687
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027774
2104641 - 2152445
47805
ENSAPLT00000027173
2106136 - 2152273
46138
ENSAPLT00000012235
2106136 - 2152273
46138