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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21530523_21539058_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21530523 - 21539058
Intron Length:
8536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCCCAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TTGTCCCCAGCA
Flanking Amino Acid:
QHIGRPHSGIGPGPHDSSPR
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
72.3
0.5
0.9
67.8
33.6
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
48.9
-0
2.1
68.75
43.3

Associated Gene:

Gene:
ERI3
Ensembl Gene ID:
ENSAPLG00000010575
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047023
21527306 - 21612922
85617
ENSAPLT00000041948
21527306 - 21613110
85805