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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21539159_21574614_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21539159 - 21574614
Intron Length:
35456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTG
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
ACCGTCTGACCC
Flanking Amino Acid:
YFKQWINLKKAYSFAMGSWP
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
71.8
40.6
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
89.1
0.88
0.6
84.4
23.4
Minor 5ss
42.8
-0.8
3
58.4
46.1
Minor BPS
44.3
-0.4
1.8
48.27
42

Associated Gene:

Gene:
ERI3
Ensembl Gene ID:
ENSAPLG00000010575
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047023
21527306 - 21612922
85617
ENSAPLT00000041948
21527306 - 21613110
85805
ENSAPLT00000011025
21511249 - 21613110
101862