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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21570987_21574614_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21570987 - 21574614
Intron Length:
3628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTG
5'SS Class:
major
3'SS Sequence:
TTTCTGTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGCCAC
U12 Branch Point Sequence:
TTTCTGTTCACA
Flanking Amino Acid:
YFKQWINLKKRAAHL*
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
71.8
40.6
Major BPS
44.9
-0.3
1.4
49.9
45.3
Major PPT
84.4
0.77
0.8
79.4
32.6
Minor 5ss
42.8
-0.8
3
58.4
46.1
Minor BPS
49.1
-0
2.4
72.02
40.3

Associated Gene:

Gene:
ERI3
Ensembl Gene ID:
ENSAPLG00000010575
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011027
21570498 - 21613110
42613