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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21574437_21574614_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21574437 - 21574614
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTG
5'SS Class:
major
3'SS Sequence:
TCCCCTCTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGTAT
U12 Branch Point Sequence:
TCCCCTCTAATA
Flanking Amino Acid:
YFKQWINLKKSLTVPDGMCS
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
71.8
40.6
Major BPS
62.7
0.32
1.4
63.4
44
Major PPT
69.3
0.43
0.8
65.4
29
Minor 5ss
42.8
-0.8
3
58.4
46.1
Minor BPS
51.7
0.05
1.7
60.86
39.9

Associated Gene:

Gene:
ERI3
Ensembl Gene ID:
ENSAPLG00000010575
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043474
21573380 - 21613110
39731