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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21574688_21592827_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21574688 - 21592827
Intron Length:
18140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TTCTCTCTTACA
Flanking Amino Acid:
VTCGDWDLKVMLPGQCQYLG
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
88.9
0.88
0.6
83.7
24.6
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
55
0.15
2
71.9
40.1

Associated Gene:

Gene:
ERI3
Ensembl Gene ID:
ENSAPLG00000010575
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011027
21570498 - 21613110
42613
ENSAPLT00000011025
21511249 - 21613110
101862
ENSAPLT00000047023
21527306 - 21612922
85617
ENSAPLT00000043474
21573380 - 21613110
39731
ENSAPLT00000041948
21527306 - 21613110
85805