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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21592920_21594719_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21592920 - 21594719
Intron Length:
1800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
GCCTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CTCTGCAAAACT
Flanking Amino Acid:
GQPSLQQVLERVDEWMAKEG
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
80.2
0.68
0.8
76.7
32
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
45.9
-0.2
2.3
68.14
48.4

Associated Gene:

Gene:
ERI3
Ensembl Gene ID:
ENSAPLG00000010575
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043474
21573380 - 21613110
39731
ENSAPLT00000041948
21527306 - 21613110
85805
ENSAPLT00000011027
21570498 - 21613110
42613
ENSAPLT00000011025
21511249 - 21613110
101862
ENSAPLT00000047023
21527306 - 21612922
85617