Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21594780_21599236_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21594780 - 21599236

Intron Length:

4457

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAGTGC

5'SS Class:

major

3'SS Sequence:

TCTCTCGTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

GCCGCTCTGACG

Flanking Amino Acid:

HPQLTPFCTELTGIIQGMVD

Intron Amino Acid Position:

189

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

67.2

39.2

Major BPS

69.1

0.47

60.7

37.6

Major PPT

82.9

0.74

0.8

80.3

31.7

Minor 5ss

36.4

-1.5

3.4

50.2

46.4

Minor BPS

44.3

-0.6

1.8

43.25

42.8

Associated Gene:

Gene:

ERI3

Ensembl Gene ID:

ENSAPLG00000010575

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011025

21511249 - 21613110

101862

ENSAPLT00000047023

21527306 - 21612922

85617

ENSAPLT00000043474

21573380 - 21613110

39731

ENSAPLT00000041948

21527306 - 21613110

85805

ENSAPLT00000011027

21570498 - 21613110

42613