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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21612730_21612811_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21612730 - 21612811
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGGCTC
5'SS Class:
major
3'SS Sequence:
CTTCCCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
CTTCCCTCCACA
Flanking Amino Acid:
LPPPAWCSQRRYHYFLVLDF
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
58.9
46
Major BPS
65
0.37
1.3
76.1
38
Major PPT
78.1
0.63
0.7
72.2
26
Minor 5ss
33.8
-1.8
3.6
41.8
45.1
Minor BPS
53.1
0.09
2
69.11
43.1

Associated Gene:

Gene:
ERI3
Ensembl Gene ID:
ENSAPLG00000010575
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047023
21527306 - 21612922
85617