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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21639643_21644290_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
21639643 - 21644290
Intron Length:
4648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
81.8
31.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
89.7
0.89
0.6
84.8
22.9
Minor 5ss
34.8
-1.7
3.3
49.9
46.4
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
RNF220
Ensembl Gene ID:
ENSAPLG00000010257
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010720
21639536 - 21821913
182378