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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21645032_21747682_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21645032 - 21747682
Intron Length:
102651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
AGGAGCTAAAGC
Flanking Amino Acid:
SSSPEDRSDRCKKKATLFDS
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
82.7
0.74
0.7
77.1
24.9
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
40.3
-0.7
2.2
45.77
42.9

Associated Gene:

Gene:
RNF220
Ensembl Gene ID:
ENSAPLG00000010257
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040448
21644291 - 21799530
155240