Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21713594_21747682_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21713594 - 21747682

Intron Length:

34089

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGTTGG

5'SS Class:

major

3'SS Sequence:

TCCTTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTAAA

U12 Branch Point Sequence:

AGGAGCTAAAGC

Flanking Amino Acid:

THRMILTLPLCKKKATLFDS

Intron Amino Acid Position:

234

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.1

43.9

Major BPS

61.3

0.28

1.1

61.7

34.1

Major PPT

82.7

0.74

0.7

77.1

24.9

Minor 5ss

42.5

-0.8

2.8

59.2

45.2

Minor BPS

40.3

-0.7

2.2

45.77

42.9

Associated Gene:

Gene:

RNF220

Ensembl Gene ID:

ENSAPLG00000010257

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031958

21644291 - 21814491

170201

ENSAPLT00000010720

21639536 - 21821913

182378