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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21759272_21767386_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21759272 - 21767386
Intron Length:
8115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
ACAGCATGAATT
Flanking Amino Acid:
KDAMAAGTPKSILLSASIKR
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
85
0.79
0.7
80.4
24.8
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
47.4
-0.1
1.8
61.33
42.4

Associated Gene:

Gene:
RNF220
Ensembl Gene ID:
ENSAPLG00000010257
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040448
21644291 - 21799530
155240
ENSAPLT00000031958
21644291 - 21814491
170201
ENSAPLT00000010720
21639536 - 21821913
182378