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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21767483_21770287_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21767483 - 21770287
Intron Length:
2805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
GTCCCCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GGGTGCTGATGG
Flanking Amino Acid:
DDIHHSDRYQTFLRVRANRQ
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
75.9
0.58
0.8
69.2
31.4
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
37.3
-1.1
2.2
37.5
44.5

Associated Gene:

Gene:
RNF220
Ensembl Gene ID:
ENSAPLG00000010257
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040448
21644291 - 21799530
155240
ENSAPLT00000031958
21644291 - 21814491
170201
ENSAPLT00000010720
21639536 - 21821913
182378