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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21770331_21777618_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21770331 - 21777618
Intron Length:
7288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCATGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
GGTTTCTCCATG
Flanking Amino Acid:
VRANRQTRLNARIGKMKRRK
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.2
39.6
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
82.8
0.74
0.8
78.1
29.5
Minor 5ss
28
-2.5
3
33.4
41.6
Minor BPS
46.1
-0.4
2
52.62
42.4

Associated Gene:

Gene:
RNF220
Ensembl Gene ID:
ENSAPLG00000010257
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040448
21644291 - 21799530
155240
ENSAPLT00000031958
21644291 - 21814491
170201
ENSAPLT00000010720
21639536 - 21821913
182378