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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21778892_21793922_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21778892 - 21793922
Intron Length:
15031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGCCAA
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
ATTLLEGGFRGSGFIMCSGK
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
62.9
39
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
37.8
-1.4
3
46.5
48.8
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
RNF220
Ensembl Gene ID:
ENSAPLG00000010257
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030852
21773997 - 21821913
47917
ENSAPLT00000010720
21639536 - 21821913
182378
ENSAPLT00000040448
21644291 - 21799530
155240
ENSAPLT00000031958
21644291 - 21814491
170201