About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21794020_21795049_F

Intron Information:

Intron Rank:
10
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
21794020 - 21795049
Intron Length:
1030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATCGTTT
5'SS Class:
minor
3'SS Sequence:
CACTTGTGCTCAG|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TGTTCCTTAACC
Flanking Amino Acid:
GDDTLEYGKPQYTEADVIPC
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.7
0.04
1.2
57.1
42.5
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
66.9
0.38
1
64.4
41.1
Minor 5ss
72.7
0.76
2.6
86.6
30.5
Minor BPS
90.9
1.27
0.8
91.71
27.5

Associated Gene:

Gene:
RNF220
Ensembl Gene ID:
ENSAPLG00000010257
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031958
21644291 - 21814491
170201
ENSAPLT00000030852
21773997 - 21821913
47917
ENSAPLT00000010720
21639536 - 21821913
182378
ENSAPLT00000040448
21644291 - 21799530
155240