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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21796878_21798569_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21796878 - 21798569
Intron Length:
1692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTCCCCCAACA
Flanking Amino Acid:
TPEFSKWASDEMPSTSNGES
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
75.5
0.57
0.8
70.6
28.9
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
60.7
0.33
1.9
78.63
37.1

Associated Gene:

Gene:
RNF220
Ensembl Gene ID:
ENSAPLG00000010257
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030852
21773997 - 21821913
47917
ENSAPLT00000010720
21639536 - 21821913
182378
ENSAPLT00000040448
21644291 - 21799530
155240
ENSAPLT00000031958
21644291 - 21814491
170201