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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21798649_21798845_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21798649 - 21798845
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TATGTTCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGTCCTGACTT
Flanking Amino Acid:
QKTCKNSDIEKASGEFSHRY
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.5
28.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
71.6
0.49
1
65.8
39.8
Minor 5ss
33.5
-1.9
3.3
43.7
38.1
Minor BPS
62.6
0.47
1.8
80.61
41.6

Associated Gene:

Gene:
RNF220
Ensembl Gene ID:
ENSAPLG00000010257
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040448
21644291 - 21799530
155240