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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21798649_21814043_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21798649 - 21814043
Intron Length:
15395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCATCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGCTCCATCATC
Flanking Amino Acid:
QKTCKNSDIEKITEDSAVTT
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.5
28.9
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
85.1
0.79
0.8
80.3
31.4
Minor 5ss
33.5
-1.9
3.3
43.7
38.1
Minor BPS
49.5
-0
2
63.78
42

Associated Gene:

Gene:
RNF220
Ensembl Gene ID:
ENSAPLG00000010257
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031958
21644291 - 21814491
170201
ENSAPLT00000030852
21773997 - 21821913
47917
ENSAPLT00000010720
21639536 - 21821913
182378