About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21837126_21838847_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21837126 - 21838847
Intron Length:
1722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACCC
5'SS Class:
major
3'SS Sequence:
GCTTTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GATATCTAAATT
Flanking Amino Acid:
GSAHLEVQHEALQLLPALLP
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
63.4
41.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
75.8
0.58
0.8
69.7
31.1
Minor 5ss
31.8
-2.1
3.3
42.8
44.3
Minor BPS
55.2
0.24
1.7
70.23
40.8

Associated Gene:

Gene:
ARMH1
Ensembl Gene ID:
ENSAPLG00000010051
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026804
21834530 - 21845752
11223
ENSAPLT00000026659
21834530 - 21855044
20515
ENSAPLT00000010464
21834530 - 21855044
20515
ENSAPLT00000044752
21834530 - 21844849
10320