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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21838971_21839155_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21838971 - 21839155
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGTG
5'SS Class:
major
3'SS Sequence:
TTTCCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCCTTCTCACTT
Flanking Amino Acid:
ALASRSESTADPNALCPREP
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
69.9
41.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
86.6
0.82
0.7
81.4
23.5
Minor 5ss
39.6
-1.2
3.5
55.7
48.5
Minor BPS
49.5
0.04
1.8
66.82
44.9

Associated Gene:

Gene:
ARMH1
Ensembl Gene ID:
ENSAPLG00000010051
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044752
21834530 - 21844849
10320
ENSAPLT00000026804
21834530 - 21845752
11223
ENSAPLT00000026659
21834530 - 21855044
20515
ENSAPLT00000010464
21834530 - 21855044
20515