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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21839229_21840087_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21839229 - 21840087
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
CTTGTCTTATTG
Flanking Amino Acid:
IQQAAAAKAIGILAKESVEV
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.5
35.6
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
83.2
0.75
0.8
77.7
35.3
Minor 5ss
30.3
-2.3
3.3
33.4
42
Minor BPS
51.3
-0.1
1.8
57.89
44.8

Associated Gene:

Gene:
ARMH1
Ensembl Gene ID:
ENSAPLG00000010051
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010464
21834530 - 21855044
20515
ENSAPLT00000044752
21834530 - 21844849
10320
ENSAPLT00000026804
21834530 - 21845752
11223
ENSAPLT00000026659
21834530 - 21855044
20515