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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21841382_21845511_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21841382 - 21845511
Intron Length:
4130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TAACCTCCAAAT
Flanking Amino Acid:
KDMGRKQSTEGNDTKMNF*
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
73.3
0.52
0.9
66.2
39
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
44.9
-0.3
1.9
62.6
40.4

Associated Gene:

Gene:
ARMH1
Ensembl Gene ID:
ENSAPLG00000010051
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026804
21834530 - 21845752
11223