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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21841382_21852158_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21841382 - 21852158
Intron Length:
10777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
GTGTCCCAAATA
Flanking Amino Acid:
KDMGRKQSTEGSITCSVLGQ
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
49.9
-0
2
64.65
42

Associated Gene:

Gene:
ARMH1
Ensembl Gene ID:
ENSAPLG00000010051
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026659
21834530 - 21855044
20515