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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21843192_21843556_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21843192 - 21843556
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTAAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTCTTGTAAAT
Flanking Amino Acid:
VVEQLRELRQRMTTELDYLL
Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
70.1
0.45
1
63
41.3
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
52.2
0.15
2.1
77.95
38.5

Associated Gene:

Gene:
KIF2C
Ensembl Gene ID:
ENSAPLG00000009290
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045033
21841892 - 21859365
17474
ENSAPLT00000040588
21841892 - 21859365
17474
ENSAPLT00000009748
21841892 - 21860799
18908