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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21846019_21846446_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21846019 - 21846446
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CATTCATGATTT
Flanking Amino Acid:
EINKSLLALKECIRALGQNK
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.1
30.7
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
81.2
0.7
0.7
80.7
31.3
Minor 5ss
40.1
-1.1
3.1
55
49.2
Minor BPS
47.7
-0.1
2
67.34
43.3

Associated Gene:

Gene:
KIF2C
Ensembl Gene ID:
ENSAPLG00000009290
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045033
21841892 - 21859365
17474
ENSAPLT00000040588
21841892 - 21859365
17474
ENSAPLT00000009748
21841892 - 21860799
18908