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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21849633_21851223_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21849633 - 21851223
Intron Length:
1591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCTCTTCACA
Flanking Amino Acid:
YGQTGSGKTHTMGGDFLGRA
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88
0.86
0.6
83.6
24.7
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
67.6
0.55
1.7
80.35
35.4

Associated Gene:

Gene:
KIF2C
Ensembl Gene ID:
ENSAPLG00000009290
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009748
21841892 - 21860799
18908
ENSAPLT00000045033
21841892 - 21859365
17474
ENSAPLT00000040588
21841892 - 21859365
17474