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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21851735_21851821_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21851735 - 21851821
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCACCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTCATGTTAAAT
Flanking Amino Acid:
CVRKRPLNKQEVLKKEVDVI
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
69
0.43
0.9
63
31.9
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
50
0.08
2.2
73.28
43.5

Associated Gene:

Gene:
KIF2C
Ensembl Gene ID:
ENSAPLG00000009290
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009748
21841892 - 21860799
18908
ENSAPLT00000045033
21841892 - 21859365
17474
ENSAPLT00000040588
21841892 - 21859365
17474