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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21854042_21854772_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21854042 - 21854772
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTTAT
U12 Branch Point Sequence:
GTTCCAGTTATT
Flanking Amino Acid:
TQTRNNLSVPGGRTKTSRLS
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.2
35.8
Major BPS
61.2
0.28
1.2
53
42.8
Major PPT
84.3
0.77
0.7
80.2
25.1
Minor 5ss
26.7
-2.7
3
28.5
38.4
Minor BPS
43.5
-0.4
2.4
67.63
42.8

Associated Gene:

Gene:
KIF2C
Ensembl Gene ID:
ENSAPLG00000009290
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045033
21841892 - 21859365
17474
ENSAPLT00000040588
21841892 - 21859365
17474
ENSAPLT00000009748
21841892 - 21860799
18908