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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21857654_21857885_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21857654 - 21857885
Intron Length:
232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
CATTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
CTTACTGTGATG
Flanking Amino Acid:
LPLQENVTVQKQKRRTTLSK
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
81.8
0.71
0.9
72.9
41.9
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
46.1
-0.4
2.1
54.2
41.9

Associated Gene:

Gene:
KIF2C
Ensembl Gene ID:
ENSAPLG00000009290
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040588
21841892 - 21859365
17474
ENSAPLT00000009748
21841892 - 21860799
18908
ENSAPLT00000045033
21841892 - 21859365
17474