Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21867314_21868661_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21867314 - 21868661

Intron Length:

1348

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TTCTATTTGAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTCAT

U12 Branch Point Sequence:

TTCTCTTCTATT

Flanking Amino Acid:

DVGNFSWGSECCTRKTRIID

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

82.7

29.2

Major BPS

0.65

1.1

77.4

37.3

Major PPT

67.3

0.39

1.2

70.4

Minor 5ss

38.4

-1.3

2.7

48.5

40.3

Minor BPS

54.6

0.22

1.9

75.69

41.5

Associated Gene:

Gene:

RPS8

Ensembl Gene ID:

ENSAPLG00000009114

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009503

21866675 - 21870569

3895