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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21869800_21870459_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21869800 - 21870459
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
GATTACTTAATT
Flanking Amino Acid:
EEQFQQGKLLACIASRPGQC
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
66.2
39.6
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
86.3
0.82
0.7
80.7
24.4
Minor 5ss
30.5
-2.2
2.8
37.9
39.5
Minor BPS
73.1
0.8
1.4
83.44
37

Associated Gene:

Gene:
RPS8
Ensembl Gene ID:
ENSAPLG00000009114
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009503
21866675 - 21870569
3895