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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21872387_21872528_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21872387 - 21872528
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CGTGCTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
GTCCCCATCACC
Flanking Amino Acid:
PSFLGSTFDMRMCEDAEQSQ
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
68
0.41
0.9
58.1
38.5
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
48.3
-0.1
2
61.86
43.1

Associated Gene:

Gene:
BEST4
Ensembl Gene ID:
ENSAPLG00000008512
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008860
21871993 - 21875199
3207