About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21889188_21890677_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21889188 - 21890677
Intron Length:
1490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
GCTCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAG
U12 Branch Point Sequence:
GTTTCAGCATCC
Flanking Amino Acid:
AKLQGGSAYLPGRPDIQWSN
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.3
63.5
42.9
Major BPS
58.3
0.21
1.7
71.4
45.1
Major PPT
74.9
0.56
0.8
69
31.5
Minor 5ss
32.7
-2
3.3
44.7
43.5
Minor BPS
41.7
-0.6
2.5
60.83
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020070
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047589
21880826 - 21896587
15762