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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21891053_21891185_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21891053 - 21891185
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
CCTGCCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCGTCCTCACGG
Flanking Amino Acid:
ASKVQVSLYGKSWDLNKICY
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
65.1
40.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
79
0.65
0.8
72.3
32.3
Minor 5ss
30.8
-2.2
2.8
34
34.7
Minor BPS
42.4
-0.7
2.1
42.53
48.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020070
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047589
21880826 - 21896587
15762