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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21923300_21934914_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21923300 - 21934914
Intron Length:
11615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTTAC
5'SS Class:
major
3'SS Sequence:
GCTTGCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTGCCTTACCT
Flanking Amino Acid:
IIMNSVTIEEGCCLQGSVIC
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71
35.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
69.8
0.44
0.9
62.8
38.3
Minor 5ss
46.1
-0.4
2.5
52.3
45
Minor BPS
67.7
0.63
1.8
83.33
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011298
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011788
21923188 - 21995516
72329