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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21935064_21935514_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21935064 - 21935514
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAG
U12 Branch Point Sequence:
CTTTTGCCAGTT
Flanking Amino Acid:
GSAQITDRGMVGSDSIIGSS
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
45.3
-0.2
1.7
58.2
48.3
Major PPT
80.6
0.69
0.7
74.2
31
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
38
-0.8
2.4
60.01
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011298
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011788
21923188 - 21995516
72329