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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21939938_21940582_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21939938 - 21940582
Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TCCTGTCTAACT
Flanking Amino Acid:
DQKKKEQASLDIYSFIKEDN
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
75.4
0.57
1
65.9
45.3
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
50.1
0.08
2.1
71.75
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011298
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011788
21923188 - 21995516
72329