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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21940714_21958962_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21940714 - 21958962
Intron Length:
18249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGTTCATGGACT
Flanking Amino Acid:
KYVVDFLVENRSITSLRSEL
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.1
0.68
0.7
72.7
32.1
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
56.9
0.3
1.8
76.83
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011298
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011788
21923188 - 21995516
72329