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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21987509_21995420_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21987509 - 21995420
Intron Length:
7912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTCTTTGACA
Flanking Amino Acid:
LSCHVNWETHTDVLVLSCDL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.8
0.81
0.9
83.7
31.3
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
85.7
1.12
0.9
90.32
23.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011298
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011788
21923188 - 21995516
72329